A Galaxy workflow for the functional annotation of metagenomic samples

Pilalis, E; Ladoukakis, E; Kolisis, FN; Chatziioannou, A

dc.contributor.author	Pilalis, E	en
dc.contributor.author	Ladoukakis, E	en
dc.contributor.author	Kolisis, FN	en
dc.contributor.author	Chatziioannou, A	en
dc.date.accessioned	2014-03-01T02:53:32Z
dc.date.available	2014-03-01T02:53:32Z
dc.date.issued	2012	en
dc.identifier.issn	03029743	en
dc.identifier.uri	https://dspace.lib.ntua.gr/xmlui/handle/123456789/36394
dc.subject	Galaxy	en
dc.subject	Gene Ontology Terms	en
dc.subject	Metagenomics	en
dc.subject	Protein Function Prediction	en
dc.subject.other	Bioinformatics tools	en
dc.subject.other	Functional annotation	en
dc.subject.other	Gene ontology	en
dc.subject.other	Intuitive interfaces	en
dc.subject.other	Large datasets	en
dc.subject.other	Metagenomics	en
dc.subject.other	MySQL database	en
dc.subject.other	Perl scripts	en
dc.subject.other	Protein function prediction	en
dc.subject.other	Work-flows	en
dc.subject.other	Artificial intelligence	en
dc.subject.other	Bioinformatics	en
dc.subject.other	Galaxies	en
dc.title	A Galaxy workflow for the functional annotation of metagenomic samples	en
heal.type	conferenceItem	en
heal.identifier.primary	10.1007/978-3-642-30448-4_31	en
heal.identifier.secondary	http://dx.doi.org/10.1007/978-3-642-30448-4_31	en
heal.publicationDate	2012	en
heal.abstract	In this work, an annotation workflow was developed, which performs a series of annotation tasks to sequences originating from metagenomic samples, using standard bioinformatics tools and Perl scripts. The Perl scripts interact with a Mysql database in order to store all annotation results to the respective tables, thus rendering easy the quick access and querying to all data. The whole pipeline was integrated into a Galaxy server, which provides a simple and intuitive interface that allows the user to easily create, run and share workflows for large datasets. © 2012 Springer-Verlag.	en
heal.journalName	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)	en
dc.identifier.doi	10.1007/978-3-642-30448-4_31	en
dc.identifier.volume	7297 LNCS	en
dc.identifier.spage	247	en
dc.identifier.epage	253	en